Stem-loop hco-mir-255

Accession

MI0020080

Description

Haemonchus contortus hco-mir-255 precursor miRNA

Sequence

243 reads, 2.0 reads per million, 14 experiments

guucggaugcgcuggaagacagGUAGGAAAUCUGGUUAGUUUUCcgcaguucgcguaAAACUGAAAAGAUUUGUUACAGgaacuacaaaggaauggacaaggc
(((((..(.(..((.....(..((((.((((((..((((((((.(((.....))).))))))))..)))))).))))..).....))..).).))))).....

Structure

-----     ga g gc  gaaga ag    G      GG        C   a 
     guucg  u c  ug     c  GUAG AAAUCU  UUAGUUUU cgc g
     |||||  | |  ||     |  |||| ||||||  |||||||| ||| u
     caggu  a g  ac     g  CAUU UUUAGA  AGUCAAAa gcg u
cggaa     -a g aa  aucaa GA    G      AA        u   c 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-255-5p

• Accession: MIMAT0057983
• Description: Haemonchus contortus hco-miR-255-5p mature miRNA
• Sequence: 23 - GUAGGAAAUCUGGUUAGUUUUC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-255-3p

• Accession: MIMAT0023411
• Description: Haemonchus contortus hco-miR-255-3p mature miRNA
• Sequence: 58 - AAACUGAAAAGAUUUGUUACAG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4