Stem-loop hco-mir-5885b

Accession

MI0020086

Description

Haemonchus contortus hco-mir-5885b precursor miRNA

Literature search

1 open access papers mention hco-mir-5885b
(1 sentences)

Sequence

878012 reads, 13116.0 reads per million, 21 experiments

aucgugaaacgguccguacgccAGGGUAUGGGUGGUGGUCUGGUAagcaugacgcuuaUGAGAUCACGCCUAUAUUCGCuuuguacaaguucgauuccugcccaa
...(.(((.(((...(((((...(((((((((((.((((((.((((((.....)))))).)))))))))))))))))....)))))....))).)))).......

Structure

----auc u   a   -ucc     -ccA           G      G      a 
       g gaa cgg    guacg    GGGUAUGGGUG UGGUCU GUAagc u
       | ||| |||    |||||    ||||||||||| |||||| |||||| g
       c cuu gcu    caugu    CUUAUAUCCGC ACUAGA Uauucg a
aacccgu -   a   ugaa     uuCG           -      G      c 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5885b-5p

• Accession: MIMAT0057986
• Description: Haemonchus contortus hco-miR-5885b-5p mature miRNA
• Sequence: 23 - AGGGUAUGGGUGGUGGUCUGGUA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5885b-3p

• Accession: MIMAT0023417
• Description: Haemonchus contortus hco-miR-5885b-3p mature miRNA
• Sequence: 59 - UGAGAUCACGCCUAUAUUCGC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4