Stem-loop hco-mir-5904c

Accession

MI0020087

Description

Haemonchus contortus hco-mir-5904c precursor miRNA

Sequence

ccaucgcuucucauaguuuucgagugugauagugguuuuacaaacugaaguauugCAAACCCACUAUUUUCACUUCGAaaaugagaaggucguucucacau
......((((((((...(((((((((.((((((((.(((.(((((....)).))).))).))))))))..))).)))))))))))))).............

Structure

-------ccaucg        agu      -   -u        u   a   -  u 
             cuucucau   uuucga gug  gauagugg uuu caa ac g
             ||||||||   |||||| |||  |||||||| ||| ||| ||  
             gaagagua   aaAGCU CAC  UUAUCACC AAA guu ug a
uacacucuugcug        ---      U   UU        C   C   a  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5904c

• Accession: MIMAT0023418
• Description: Haemonchus contortus hco-miR-5904c mature miRNA
• Sequence: 56 - CAAACCCACUAUUUUCACUUCGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4