Stem-loop hco-mir-5924-2

Accession

MI0020088

Description

Haemonchus contortus hco-mir-5924-2 precursor miRNA

Sequence

uaagguccguuuaugagauaugucaacacagccagaagcaguaguucuuuucgucgcAACUGCUUCCAGCUGUGCUGACAUaucucauaaaagagggccucau
..((((((.((((((((((((((((.((((((..((((((((.((..........)).))))))))..)))))).))))))))))))))))...))))))...

Structure

-ua      --g                a      ca        a  ucuu 
   aggucc   uuuaugagauauguca cacagc  gaagcagu gu    u
   ||||||   |||||||||||||||| ||||||  |||||||| ||     
   uccggg   aaauacucuaUACAGU GUGUCG  CUUCGUCA cg    u
uac      aga                C      AC        A  cugc 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5924-3p

• Accession: MIMAT0023404
• Description: Haemonchus contortus hco-miR-5924-3p mature miRNA
• Sequence: 58 - AACUGCUUCCAGCUGUGCUGACAU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4