Stem-loop hco-mir-5931

Accession

MI0020089

Description

Haemonchus contortus hco-mir-5931 precursor miRNA

Sequence

cauucugcagagcaaccgagacUGCAGGUCUUGAUUGGAAGGCUugucccaaucaggcuuuccagcuaggaccugcagccuuaguugcugugaauaaaucu
.......((.((((((.(((.((((((((((((.((((((((((((.......)))))))))))).)))))))))))).))).)))))).)).........

Structure

--cauucug  g      c   a            A            uc 
         ca agcaac gag cUGCAGGUCUUG UUGGAAGGCUug  c
         || |||||| ||| |||||||||||| ||||||||||||  c
         gu ucguug uuc gacguccaggau gaccuuucggac  a
ucuaaauaa  g      a   c            c            ua 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5931

• Accession: MIMAT0023420
• Description: Haemonchus contortus hco-miR-5931 mature miRNA
• Sequence: 23 - UGCAGGUCUUGAUUGGAAGGCU - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4