miRBase entry: hco-mir-5918b

Stem-loop hco-mir-5918b


Accession
MI0020090
Description
Haemonchus contortus hco-mir-5918b precursor miRNA


Sequence

1745 reads, 22.0 reads per million, 20 experiments
ccccuucgcugauaggauaacgggUAGCACGAUUGUGAGACAAGCuugcgcagaagcUCGCUCUACAUCGUGUUACCCAaugucucaucgccguuggacccuu
..((..((.((((.(((((..((((((((((((.(((((.(.(((((......))))).)))).))))))))))))))..))))).)))).))..))......

Structure
----cc  uu  c    a     ac            U  -   A A     gc 
      cc  cg ugau ggaua  gggUAGCACGAU GU GAG C AGCuu  g
      ||  || |||| |||||  |||||||||||| || ||| | |||||   
      gg  gc gcua ucugu  CCCAUUGUGCUA CA CUC G Ucgaa  c
uuccca  uu  c    c     aA            -  U   - C     ga 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5918b-5p

Accession MIMAT0057987
Description Haemonchus contortus hco-miR-5918b-5p mature miRNA
Sequence 25 - UAGCACGAUUGUGAGACAAGC - 45
Evidence experimental
Illumina [1]

Mature hco-miR-5918b-3p

Accession MIMAT0023421
Description Haemonchus contortus hco-miR-5918b-3p mature miRNA
Sequence 58 - UCGCUCUACAUCGUGUUACCCA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4