Stem-loop hco-mir-5933

Accession

MI0020094

Description

Haemonchus contortus hco-mir-5933 precursor miRNA

Sequence

cgcgccuuuuuuggauaucggugacuguucugcacagugcaGAAUGGUGAUUGUUGCGUCCGCAgaagacgcaggucuggaugaaccuuugguuuuguguuuuagguuca
..((((.............))))(((.....((((((.((.(((.((((((..(((((((.......)))))))))).......)))))).)).))))))....)))...

Structure

cgcgccuuuuuuggauaucggug   guucu      u  a   U   -------   UG       CG 
                       acu     gcacag gc GAA GGU       GAU  UUGCGUC  C
                       |||     |||||| || ||| |||       |||  |||||||  A
                       ugg     uguguu ug uuu cca       cug  gacgcag  g
--------------------acu   -auuu      u  g   -   aguaggu   --       aa 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5933

• Accession: MIMAT0023425
• Description: Haemonchus contortus hco-miR-5933 mature miRNA
• Sequence: 42 - GAAUGGUGAUUGUUGCGUCCGCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4