Stem-loop hco-mir-40e

Accession

MI0020097

Description

Haemonchus contortus hco-mir-40e precursor miRNA

Sequence

825 reads, 9.0 reads per million, 20 experiments

auuaacaguaugcccaaggacucACUGCAGGACCGCUCAGGUGAAGcuucugaagacuUCACCGGGAUUUCUGCAGUGAguucuagccuacaacaccuagc
.......(((.((...((((((((((((((((...(((.((((((((((...))).))))))))))..)))))))))))))))).)).)))..........

Structure

---auuaaca   u  cca                CCG   A       -   c 
          gua gc   aggacucACUGCAGGA   CUC GGUGAAG cuu  
          ||| ||   ||||||||||||||||   ||| ||||||| ||| u
          cau cg   ucuugAGUGACGUCUU   GGG CCACUuc gaa  
cgauccacaa   c  --a                -UA   -       a   g 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-40e-5p

• Accession: MIMAT0023428
• Description: Haemonchus contortus hco-miR-40e-5p mature miRNA
• Sequence: 24 - ACUGCAGGACCGCUCAGGUGAAG - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-40e-3p

• Accession: MIMAT0057990
• Description: Haemonchus contortus hco-miR-40e-3p mature miRNA
• Sequence: 59 - UCACCGGGAUUUCUGCAGUGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4