Stem-loop hco-mir-5940

Accession

MI0020104

Description

Haemonchus contortus hco-mir-5940 precursor miRNA

Sequence

155 reads, 3.0 reads per million, 13 experiments

gagcuguccgaugggccgucgggaaguccggcUCAGCAGGACCGAGCCCACACUcccuccguuGGAGGGAGUGUGGGCUCGGCccugcugagacggcccaucggaccuuc
.....(((((((((((((((((.....))).(((((((((.(((((((((((((((((((...))))))))))))))))))).)))))))))))))))))))))))....

Structure

gagcu              cgggaaguccgg         A                   g 
     guccgaugggccgu            cUCAGCAGG CCGAGCCCACACUcccucc  
     ||||||||||||||            ||||||||| ||||||||||||||||||| u
     caggcuacccggca            gagucgucc GGCUCGGGUGUGAGGGAGG  
-cuuc              ------------         C                   u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5940-5p

• Accession: MIMAT0057995
• Description: Haemonchus contortus hco-miR-5940-5p mature miRNA
• Sequence: 33 - UCAGCAGGACCGAGCCCACACU - 54
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5940-3p

• Accession: MIMAT0023435
• Description: Haemonchus contortus hco-miR-5940-3p mature miRNA
• Sequence: 64 - GGAGGGAGUGUGGGCUCGGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4