Stem-loop hco-mir-5928b

Accession

MI0020107

Description

Haemonchus contortus hco-mir-5928b precursor miRNA

Sequence

157 reads, 1.0 reads per million, 20 experiments

ggcccaaaacUGAAGUAAGGUAGAUUAGUAAGGUcagcugauccUACUAUUCUACUGUACUUCGAAAuugggcccaa
(((((((...(((((((.((((((.(((((.((((....)))).))))).)))))).)))))))...)))))))...

Structure

---       aac       A      U     A    a 
   ggcccaa   UGAAGUA GGUAGA UAGUA GGUc g
   |||||||   ||||||| |||||| ||||| ||||  
   ccggguu   GCUUCAU UCAUCU AUCAU cuag c
aac       AAA       G      U     c    u 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5928b-5p

• Accession: MIMAT0023438
• Description: Haemonchus contortus hco-miR-5928b-5p mature miRNA
• Sequence: 11 - UGAAGUAAGGUAGAUUAGUAAGGU - 34
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5928b-3p

• Accession: MIMAT0057996
• Description: Haemonchus contortus hco-miR-5928b-3p mature miRNA
• Sequence: 45 - UACUAUUCUACUGUACUUCGAAA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4