Stem-loop hco-mir-5945

Accession

MI0020115

Description

Haemonchus contortus hco-mir-5945 precursor miRNA

Sequence

aaagaggugcAGUUUUGGCGGGAAGUAUUAGgauaaaaagagggcgaggagcgcuaacacggcucGAGGACUCCAUCGCCUGGACUGGaucaggag
.....(((.((((((.(((((((.((....((........((.((.....)).))........))....)))))..)))).)))))).))).....

Structure

aaaga   g      U    --   A  AUUA  auaaaaag  g  g 
     ggu cAGUUU GGCG  GGA GU    Gg        ag gc a
     ||| |||||| ||||  ||| ||    ||        || || g
     cua GUCAGG CCGC  CCU CA    cu        uc cg g
gagga   G      U    UA   -  GGAG  cggcacaa  g  a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5945-5p

• Accession: MIMAT0023446
• Description: Haemonchus contortus hco-miR-5945-5p mature miRNA
• Sequence: 11 - AGUUUUGGCGGGAAGUAUUAG - 31
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5945-3p

• Accession: MIMAT0023447
• Description: Haemonchus contortus hco-miR-5945-3p mature miRNA
• Sequence: 66 - GAGGACUCCAUCGCCUGGACUGG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4