Stem-loop hco-mir-5947

Accession

MI0020117

Description

Haemonchus contortus hco-mir-5947 precursor miRNA

Sequence

gauccggcgucgucggguugaguggaguugaugucauaccauucacagguugaucucugauggcaUCAGCUUCCUUGUAGAACGGAaugguaucg
((((((((...))))))))(((.((((((((((((((.....(((.....)))......)))))))))))))))))...................

Structure

gauccggcgucgucggguu   u              -accau   c 
                   gag ggaguugaugucau      uca a
                   ||| ||||||||||||||      ||| g
                   UUC CUUCGACUacggua      agu g
gcuaugguaAGGCAAGAUG   -              gucucu   u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5947

• Accession: MIMAT0023449
• Description: Haemonchus contortus hco-miR-5947 mature miRNA
• Sequence: 66 - UCAGCUUCCUUGUAGAACGGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4