Stem-loop hco-mir-5951

Accession

MI0020121

Description

Haemonchus contortus hco-mir-5951 precursor miRNA

Sequence

104 reads, 3.0 reads per million, 14 experiments

GUAGAUGACCUUCUCCAUUGCCCUccgggaugcaguaacgGUUCCGUCAGGACGACGAAGGAaggucaucuug
..((((((((((((...(((.(((.((((((.........))))))..))).)))....))))))))))))..

Structure

GU            -CCA   C   -c      gca 
  AGAUGACCUUCU    UUG CCU  cgggau   g
  ||||||||||||    ||| |||  ||||||   u
  ucuacuggaAGG    AGC GGA  GCCUUG   a
gu            AAGC   A   CU      gca 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5951-5p

• Accession: MIMAT0057998
• Description: Haemonchus contortus hco-miR-5951-5p mature miRNA
• Sequence: 1 - GUAGAUGACCUUCUCCAUUGCCCU - 24
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5951-3p

• Accession: MIMAT0023453
• Description: Haemonchus contortus hco-miR-5951-3p mature miRNA
• Sequence: 41 - GUUCCGUCAGGACGACGAAGGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4