Stem-loop hco-mir-5886b

Accession

MI0020130

Description

Haemonchus contortus hco-mir-5886b precursor miRNA

Sequence

539 reads, 4.0 reads per million, 20 experiments

cuuuuuauauugcauuuuguucaAACUGAGUCAUUGAUGUGUUCUUguucaauacuaaGAACACUCUUUGACUUUGGUUUGAagaauuauaugcaaucagauccuagaau
........(((((((.((.((((((((((((((..((.(((((((((........)))))))))))..)))).)))))))))).))....))))))).............

Structure

-----cuuuuuau       ---u  g          -    UU  U         uuc 
             auugcau    uu uucaAACUGA GUCA  GA GUGUUCUUg   a
             |||||||    || |||||||||| ||||  || |||||||||    
             uaacgua    aa aAGUUUGGUU CAGU  CU CACAAGaau   a
uaagauccuagac       uauu  g          U    UU  -         cau 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5886b-5p

• Accession: MIMAT0057999
• Description: Haemonchus contortus hco-miR-5886b-5p mature miRNA
• Sequence: 24 - AACUGAGUCAUUGAUGUGUUCUU - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5886b-3p

• Accession: MIMAT0023462
• Description: Haemonchus contortus hco-miR-5886b-3p mature miRNA
• Sequence: 59 - GAACACUCUUUGACUUUGGUUUGA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4