Stem-loop hco-mir-5960

Accession

MI0020132

Description

Haemonchus contortus hco-mir-5960 precursor miRNA

Literature search

1 open access papers mention hco-mir-5960
(10 sentences)

Sequence

7672832 reads, 66425.0 reads per million, 21 experiments

augcugaugacguauacuucuuguGUGGUCCGGAGUCGGAGGGUUAUcuguugauccccucggggaaUUUCCCUUCGGCACAAACUCGACCgacauauguuuugcauuuuucaccguuuuuuugc
((((....((((((.......(((.(((((.((.(((((((((..((.......((((....))))))..))))))))).....)).))))))))))))))..))))..................

Structure

------------------    ugau      uacuucu   G     C  ----A         UU  cuguuga    c 
                  augc    gacgua       ugu UGGUC GG     GUCGGAGGG  AU       uccc u
                  ||||    ||||||       ||| ||||| ||     |||||||||  ||       ||||  
                  uacg    uuguau       aca gCCAG UC     CGGCUUCCC  Ua       aggg c
cguuuuuuugccacuuuu    --uu      -------   -     C  AAACA         UU  -------    g 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5960-5p

• Accession: MIMAT0023464
• Description: Haemonchus contortus hco-miR-5960-5p mature miRNA
• Sequence: 25 - GUGGUCCGGAGUCGGAGGGUUAU - 47
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5960-3p

• Accession: MIMAT0058001
• Description: Haemonchus contortus hco-miR-5960-3p mature miRNA
• Sequence: 68 - UUUCCCUUCGGCACAAACUCGACC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4