Stem-loop hco-mir-5960

Accession

MI0020132

Description

Haemonchus contortus hco-mir-5960 precursor miRNA

Literature search

1 open access papers mention hco-mir-5960
(9 sentences)

Sequence

augcugaugacguauacuucuuguGUGGUCCGGAGUCGGAGGGUUAUcuguugauccccucggggaauuucccuucggcacaaacucgaccgacauauguuuugcauuuuucaccguuuuuuugc
((((....((((((.......(((.(((((.((.(((((((((..((.......((((....))))))..))))))))).....)).))))))))))))))..))))..................

Structure

------------------    ugau      uacuucu   G     C  ----A         UU  cuguuga    c 
                  augc    gacgua       ugu UGGUC GG     GUCGGAGGG  AU       uccc u
                  ||||    ||||||       ||| ||||| ||     |||||||||  ||       ||||  
                  uacg    uuguau       aca gccag uc     cggcuuccc  ua       aggg c
cguuuuuuugccacuuuu    --uu      -------   -     c  aaaca         uu  -------    g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5960

• Accession: MIMAT0023464
• Description: Haemonchus contortus hco-miR-5960 mature miRNA
• Sequence: 25 - GUGGUCCGGAGUCGGAGGGUUAU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4