Stem-loop hco-mir-5961

Accession

MI0020133

Description

Haemonchus contortus hco-mir-5961 precursor miRNA

Sequence

1452 reads, 17.0 reads per million, 20 experiments

uucgucacugauucuaguugguuguUCCACGAACUACGCAUUUCUGAugucugccguuaugggaucccauaUCGGCUGAUCGUGAAACUGCGUUCaggaguaccgagaaugggugacc
...((((((.(((((...((((..((((..((...(((((((((((((....((((.(((((....))))).))))..)))).)))).))))))).)))).))))))))).)))))).

Structure

uuc      g     agu    ug    AC  ACU     -    -    gucu    u     g 
   gucacu auucu   uggu  uUCC  GA   ACGCA UUUC UGAu    gccg uaugg a
   |||||| |||||   ||||  ||||  ||   ||||| |||| ||||    |||| |||||  
   cagugg uaaga   gcca  gagg  CU   UGCGU AAAG GCUA    CGGC auacc u
--c      g     ---    -u    -a  ---     C    U    --GU    U     c 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5961-5p

• Accession: MIMAT0023465
• Description: Haemonchus contortus hco-miR-5961-5p mature miRNA
• Sequence: 26 - UCCACGAACUACGCAUUUCUGA - 47
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5961-3p

• Accession: MIMAT0058002
• Description: Haemonchus contortus hco-miR-5961-3p mature miRNA
• Sequence: 72 - UCGGCUGAUCGUGAAACUGCGUUC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4