Stem-loop hco-mir-5964

Accession

MI0020137

Description

Haemonchus contortus hco-mir-5964 precursor miRNA

Sequence

897 reads, 8.0 reads per million, 18 experiments

gucgcguuauagcuucccgugacucggAAAGUCGCGAUUUGAAAACGCUUucuccuugaaagcgCUUUCAACUCUCGACUGUCCGAAucauggugagccauuuuaugaaga
...........((((.((((((.(((((.(((((.((.((((((.(((((((.....))))))).)))))).)).))))).))))).)))))).)))).............

Structure

--gucgcguuaua    c      c     A     C  U      A       u 
             gcuu ccguga ucggA AGUCG GA UUGAAA CGCUUuc c
             |||| |||||| ||||| ||||| || |||||| ||||||| c
             cgag gguacu AGCCU UCAGC CU AACUUU gcgaaag u
agaaguauuuuac    u      A     G     U  C      C       u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5964-5p

• Accession: MIMAT0058004
• Description: Haemonchus contortus hco-miR-5964-5p mature miRNA
• Sequence: 28 - AAAGUCGCGAUUUGAAAACGCUU - 50
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5964-3p

• Accession: MIMAT0023469
• Description: Haemonchus contortus hco-miR-5964-3p mature miRNA
• Sequence: 65 - CUUUCAACUCUCGACUGUCCGAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4