Stem-loop hco-mir-5946b

Accession

MI0020138

Description

Haemonchus contortus hco-mir-5946b precursor miRNA

Sequence

cuaguuaagcagguuuucguucUAGAUUUACACCGGUUAUCGUGAgcauuuuugcaucaugauccugguguaauuugagaaugaaaccagaauuauuucuguca
...........(((((.((((((.((.(((((((((..((((((((((....))).))))))).))))))))).)).)))))))))))((((....))))....

Structure

-----cuaguuaagca     u      A  U         UU       -   u 
                gguuu cguucU GA UUACACCGG  AUCGUGA gca u
                ||||| |||||| || |||||||||  ||||||| |||  
                ccaaa guaaga uu aaugugguc  uaguacu cgu u
acugucuuuauuaaga     -      g  u         -c       a   u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5946b

• Accession: MIMAT0023470
• Description: Haemonchus contortus hco-miR-5946b mature miRNA
• Sequence: 23 - UAGAUUUACACCGGUUAUCGUGA - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4