Stem-loop hco-mir-5965

Accession

MI0020140

Description

Haemonchus contortus hco-mir-5965 precursor miRNA

Sequence

ucucauacaggcggaauauggacgaaauggagagcggaguugucgcuuacaugaGACAAUUCUGACAUUUCGGAuagugacucucgaaagcccuuga
.........((((((...((..(((((((.....((((((((((.(......).)))))))))).)))))))..)).....))).....))).....

Structure

ucucauaca   -----   --aua  ga       gagag          g uu 
         ggc     gga     ug  cgaaaug     cggaguuguc c  a
         |||     |||     ||  |||||||     |||||||||| |   
         ccg     ucu     au  GCUUUAC     GUCUUAACAG g  c
----aguuc   aaagc   cagug  AG       ----A          a ua 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5965

• Accession: MIMAT0023472
• Description: Haemonchus contortus hco-miR-5965 mature miRNA
• Sequence: 55 - GACAAUUCUGACAUUUCGGA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4