Stem-loop hco-mir-5972

Accession

MI0020147

Description

Haemonchus contortus hco-mir-5972 precursor miRNA

Sequence

gcugcaccagcaaaaccucagcuugggcuuaagcuucggagucgccuuaggcuaagGCUUCGUCUGAGGCUUAGGCUUAGGCuucggcuucgucuuaggcuuag
((((...))))........((((((((((((((((((((((..((((((...))))))..).)))))))))))))))))))))..(((((......)))))...

Structure

--gcugcaccagcaaaaccuc                     - uc      g 
                     agcuugggcuuaagcuucgga g  gccuua  
                     ||||||||||||||||||||| |  |||||| g
                     uCGGAUUCGGAUUCGGAGUCU C  CGgaau  
gauucggauucugcuucggcu                     G UU      c 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5972

• Accession: MIMAT0023479
• Description: Haemonchus contortus hco-miR-5972 mature miRNA
• Sequence: 57 - GCUUCGUCUGAGGCUUAGGCUUAGGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4