Stem-loop hco-mir-5973

Accession

MI0020148

Description

Haemonchus contortus hco-mir-5973 precursor miRNA

Sequence

gccggccauucuucugccgagaugaagucggagaguucgcucuugcaccacgcuuggacgaucuuggccuugugagcgggcgccgaauCUUGCUGGAAUGUCCAGGGgcg
(((((.((((((...((.(((((....((((...((((((((..(((....(((.(((...))).)))..))))))))))).))))))))))).)))))).))...))).

Structure

-   ---  c      ucu  c     gaag    aga        uu   ccac   u   c 
 gcc   gg cauucu   gc gagau    ucgg   guucgcuc  gca    gcu gga  
 |||   || ||||||   || |||||    ||||   ||||||||  |||    ||| ||| g
 cgG   CC GUAAGG   CG UUCua    agcc   cgggcgag  ugu    cgg ucu  
g   GGA  U      --U  -     ----    --g        --   --uc   u   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5973

• Accession: MIMAT0023480
• Description: Haemonchus contortus hco-miR-5973 mature miRNA
• Sequence: 89 - CUUGCUGGAAUGUCCAGGG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4