Stem-loop hco-mir-5928e

Accession

MI0020149

Description

Haemonchus contortus hco-mir-5928e precursor miRNA

Sequence

auaggaucauuggggcacagauUUCAAGUAAAGUAGGUUAGUAGGAUCagcugacucuacuaaacuaucuuacuucgaauuugugccccaaugauaggcguuagagucgu
.....(((((((((((((((((((.((((((.((((..(((((((.((....)).)))))))..)))).)))))).))))))))))))))))))).(((......)))..

Structure

----------auagg                   C      A    GU       A  a 
               aucauuggggcacagauUU AAGUAA GUAG  UAGUAGG UC g
               ||||||||||||||||||| |||||| ||||  ||||||| ||  
               uaguaaccccguguuuaag uucauu uauc  aucaucu ag c
ugcugagauugcgga                   c      c    aa       c  u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5928e

• Accession: MIMAT0023481
• Description: Haemonchus contortus hco-miR-5928e mature miRNA
• Sequence: 23 - UUCAAGUAAAGUAGGUUAGUAGGAUC - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4