Stem-loop hco-mir-5885c

Accession

MI0020152

Description

Haemonchus contortus hco-mir-5885c precursor miRNA

Literature search

1 open access papers mention hco-mir-5885c
(1 sentences)

Sequence

3638346 reads, 52768.0 reads per million, 21 experiments

guccgccaauaaacggcugauuaucAGAGUAUACGUGGUGUUCUGGUAagcaugacgcuuaUGAGAUCACGCGUAUAUUCGCUAgacaaguucgaauccucgaggggagu
.((((((.......))).........(((((((((((.((.(((.((((((.....)))))).))).)))))))))))))..........(((((....))))).)))..

Structure

-g   ---gccaauaaacggcugauuaucA           G  U   G      a 
  ucc                         GAGUAUACGUG UG UCU GUAagc u
  |||                         ||||||||||| || ||| |||||| g
  agg                         CUUAUAUGCGC AC AGA Uauucg a
ug   ggagcuccuaagcuugaacagAUCG           -  U   G      c 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5885c-5p

• Accession: MIMAT0058007
• Description: Haemonchus contortus hco-miR-5885c-5p mature miRNA
• Sequence: 26 - AGAGUAUACGUGGUGUUCUGGUA - 48
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5885c-3p

• Accession: MIMAT0023484
• Description: Haemonchus contortus hco-miR-5885c-3p mature miRNA
• Sequence: 62 - UGAGAUCACGCGUAUAUUCGCUA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4