Stem-loop hco-mir-5892b

Accession

MI0020154

Description

Haemonchus contortus hco-mir-5892b precursor miRNA

Sequence

cgagccuuccgguccugaaguuugcucagaugauccagauguuagucgcccgcauggaaagcAAUUAACAUUUGGAUCAUCUGAGCgauauucgaggaugcuauucgaagccuguacuccuuauuccaucuacugcac
...((.(((((((.((((.(((((.((....))..))))).))))..))).....)))).))..........((((......(((.....((((((.......)))))).......))).....))))..........

Structure

cgagccuuccgguccugaaguuugcucagaugauccagauguuagucgcccgcauggaaagcAAUUAACAUU    UCAUCU   --Cgaua      ga 
                                                                        UGGA      GAG       uucgag  u
                                                                        ||||      |||       ||||||  g
                                                                        accu      cuc       aagcuu  c
--------------------------------------------------------------cacgucaucu    -uauuc   auguccg      au 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5892b

• Accession: MIMAT0023486
• Description: Haemonchus contortus hco-miR-5892b mature miRNA
• Sequence: 63 - AAUUAACAUUUGGAUCAUCUGAGC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4