Stem-loop hco-mir-5979

Accession

MI0020157

Description

Haemonchus contortus hco-mir-5979 precursor miRNA

Sequence

gcgcaggaaauauguauguucaUGGAUGAUCGCGAAAGUGCCAUGAcauccaauccauggcacuuuugcgaucauucaugaacauauauccaauagaaaacug
.....(((....(((((((((((((((((((((((((((((((((..........))))))))))))))))))))))))))))))))))))............

Structure

-------gcgca   aaua                                 Acau 
            gga    uguauguucaUGGAUGAUCGCGAAAGUGCCAUG    c
            |||    |||||||||||||||||||||||||||||||||     
            ccu    auauacaaguacuuacuagcguuuucacgguac    c
gucaaaagauaa   ----                                 cuaa 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5979

• Accession: MIMAT0023489
• Description: Haemonchus contortus hco-miR-5979 mature miRNA
• Sequence: 23 - UGGAUGAUCGCGAAAGUGCCAUGA - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4