Stem-loop hco-mir-5982

Accession

MI0020160

Description

Haemonchus contortus hco-mir-5982 precursor miRNA

Sequence

auacauaguaaugacgaccgcuAGCUCCUCAGGAGUUGGUAGGUAccuuucgguacucaccgacuccuaagaagcuagcgguucugcgacguugcagaacu
................((((((((((.((.((((((((((.((((((....)))))).)))))))))).)).))))))))))((((((....))))))...

Structure

---auacauaguaaugacg          C  C          A      u 
                   accgcuAGCU CU AGGAGUUGGU GGUAcc u
                   |||||||||| || |||||||||| ||||||  
                   uggcgaucga ga uccucagcca ucaugg u
ucaagacguugcagcgucu          a  a          c      c 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5982

• Accession: MIMAT0023492
• Description: Haemonchus contortus hco-miR-5982 mature miRNA
• Sequence: 23 - AGCUCCUCAGGAGUUGGUAGGUA - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4