Stem-loop hco-mir-5984a

Accession

MI0020162

Description

Haemonchus contortus hco-mir-5984a precursor miRNA

Sequence

132 reads, 1.0 reads per million, 20 experiments

accgaauauuuuggccaucauaAAACCGUCUAAAGAGUACGCUUcuaugcauagaaGUGUACUCUUUAGACGGUUCUAugaugauuuuuauaccuucuugc
.(((((...))))).(((((((.((((((((((((((((((((((((....)))))))))))))))))))))))).)))))))..................

Structure

---accgaauauuuuggc       A                        u 
                  caucaua AACCGUCUAAAGAGUACGCUUcua g
                  ||||||| ||||||||||||||||||||||||  
                  guaguAU UUGGCAGAUUUCUCAUGUGaagau c
cguucuuccauauuuuua       C                        a 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5984a-5p

• Accession: MIMAT0058012
• Description: Haemonchus contortus hco-miR-5984a-5p mature miRNA
• Sequence: 23 - AAACCGUCUAAAGAGUACGCUU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5984a-3p

• Accession: MIMAT0023494
• Description: Haemonchus contortus hco-miR-5984a-3p mature miRNA
• Sequence: 57 - GUGUACUCUUUAGACGGUUCUA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4