Stem-loop hco-mir-5984b

Accession

MI0020163

Description

Haemonchus contortus hco-mir-5984b precursor miRNA

Sequence

141 reads, 1.0 reads per million, 15 experiments

aaucaucaUAGAACCGUCUAAAGAGUACacuucuaugcauagaaGCGUACUCUUUAGACGGUUUuaugauggcc
..((((((((((((((((((((((((((.((((((....)))))).))))))))))))))))))))))))))..

Structure

aa                          a      u 
  ucaucaUAGAACCGUCUAAAGAGUAC cuucua g
  |||||||||||||||||||||||||| ||||||  
  gguaguauUUUGGCAGAUUUCUCAUG Gaagau c
cc                          C      a 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5984b-5p

• Accession: MIMAT0058013
• Description: Haemonchus contortus hco-miR-5984b-5p mature miRNA
• Sequence: 9 - UAGAACCGUCUAAAGAGUAC - 28
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5984b-3p

• Accession: MIMAT0023495
• Description: Haemonchus contortus hco-miR-5984b-3p mature miRNA
• Sequence: 45 - GCGUACUCUUUAGACGGUUU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4