Stem-loop hco-mir-72

Accession

MI0020167

Description

Haemonchus contortus hco-mir-72 precursor miRNA

Literature search

1 open access papers mention hco-mir-72
(2 sentences)

Sequence

guguugagcaAGGCAAGAUGUUGGCAUAGCUGAacugcaguuucucagcuaugcuacaugaggccacgcacggcaucagcaccucuuucuuucccuacugauc
(((((((((..(((...((((.(((((((((((...........)))))))))))))))...))).......)).))))))).....................

Structure

---------------------       -  -----aA   AAG    U           acug 
                     guguuga gc       GGC   AUGU GGCAUAGCUGA    c
                     ||||||| ||       |||   |||| |||||||||||    a
                     cacgacu cg       ccg   uaca ucguaucgacu    g
cuagucaucccuuucuuucuc       a  gcacgca   gag    -           cuuu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-72

• Accession: MIMAT0023498
• Description: Haemonchus contortus hco-miR-72 mature miRNA
• Sequence: 11 - AGGCAAGAUGUUGGCAUAGCUGA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4