Stem-loop hco-mir-5986

Accession

MI0020168

Description

Haemonchus contortus hco-mir-5986 precursor miRNA

Sequence

auagauuuguUGGAAUGUUGUGAAUAUUCUCguguucgcaacacaguucuugccauguuggauauuugcaccuuuucaagcucacuuauaggugagggagg
.........((((((.(.(((((((((((.((((...((((........))))))))..))))))))))).).)))))).((((((....)))))).....

Structure

-------------auagauuug      U U           -U    uuc    cac 
                      uUGGAA G UGUGAAUAUUC  Cgug   gcaa   a
                      |||||| | |||||||||||  ||||   ||||    
                      aacuuu c acguuuauagg  guac   cguu   g
ggagggaguggauauucacucg      u c           uu    ---    cuu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5986

• Accession: MIMAT0023499
• Description: Haemonchus contortus hco-miR-5986 mature miRNA
• Sequence: 11 - UGGAAUGUUGUGAAUAUUCUC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4