Stem-loop hco-mir-5991

Accession

MI0020169

Description

Haemonchus contortus hco-mir-5991 precursor miRNA

Sequence

ucuucauaacauuuuauuuuuagcguugaucgagcuaggcuucuauuugccuuugauuucgcuucgucauUGAGGUAGUAGGUGGUGUUCGAuugaugccau
......................(((((((((((((...(((((((((.(((((((((........))))..))))))))))).))))))))))))))))...

Structure

ucuucauaacauuuuauuuuua             uag   -      u     --    uuc 
                      gcguugaucgagc   gcu ucuauu gccuu  ugau   g
                      |||||||||||||   ||| |||||| |||||  ||||    
                      cguaguuAGCUUG   UGG GGAUGA UGGAG  acug   c
-------------------uac             ---   U      -     Uu    cuu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5991

• Accession: MIMAT0023500
• Description: Haemonchus contortus hco-miR-5991 mature miRNA
• Sequence: 71 - UGAGGUAGUAGGUGGUGUUCGA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4