Stem-loop hco-mir-87c

Accession

MI0020173

Description

Haemonchus contortus hco-mir-87c precursor miRNA

Sequence

guacaucaauaacagcugugcagcuguuacaacuaaggucucugaucugguuuugcuuccuauucguguuGGGAGCAAAGUUUCAGGUUCaagagacauc
.........((((((((....))))))))........(((((((((((((((((((((((..........))))))))))..)))))))..))))))...

Structure

guacaucaauaacagcugugcagcuguuacaacuaag      --       --          uauu 
                                     gucucu  gaucugg  uuuugcuucc    c
                                     ||||||  |||||||  ||||||||||     
                                     cagaga  UUGGACU  GAAACGAGGG    g
----------------------------------cua      aC       UU          uugu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-87c

• Accession: MIMAT0023504
• Description: Haemonchus contortus hco-miR-87c mature miRNA
• Sequence: 71 - GGGAGCAAAGUUUCAGGUUC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4