Stem-loop hco-mir-5989

Accession

MI0020174

Description

Haemonchus contortus hco-mir-5989 precursor miRNA

Sequence

gcuccacuauGUAGUCACCUGGGCGAACAGACAugaugauucggucauguuuguccagggcacuaucccaguucugugacagaaucaugguuuucuaaguaau
..........(((((..(((((((((((((((.(((....)))))).))))))))))))..))))).(((((((((...))))))..))).............

Structure

---------------------------gcuccacuau     CA            -   A   u 
                                     GUAGU  CCUGGGCGAACA GAC uga g
                                     |||||  |||||||||||| ||| |||  
                                     uauca  ggaccuguuugu cug gcu a
uaaugaaucuuuugguacuaagacagugucuugaccc     cg            a   -   u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5989

• Accession: MIMAT0023505
• Description: Haemonchus contortus hco-miR-5989 mature miRNA
• Sequence: 11 - GUAGUCACCUGGGCGAACAGACA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4