Stem-loop hco-mir-5990

Accession

MI0020175

Description

Haemonchus contortus hco-mir-5990 precursor miRNA

Sequence

gggagauuagucuagagcagauuagucugauauaggcgucuuacuccggaguacaaccaauuuuaugaaaAAUCAUCAAUUUGAUGUAUUCUGcguugagacc
...((((((((((.....)))))))))).........((((((..((((((((((..(((.((.((((....)))).)).))).))))))))).).)))))).

Structure

gggagauuagucuagagcagauuagucugauauaggc      cu -         ac   u  u    a 
                                     gucuua  c cggaguaca  caa uu auga a
                                     ||||||  | |||||||||  ||| || ||||  
                                     cagagu  g GUCUUAUGU  GUU AA UACU A
------------------------------------c      -u c         -A   U  C    A 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5990-5p

• Accession: MIMAT0023506
• Description: Haemonchus contortus hco-miR-5990-5p mature miRNA
• Sequence: 71 - AAUCAUCAAUUUGAUGUAUUCUG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4