Stem-loop ame-mir-6000a

Accession

MI0020210

Description

Apis mellifera ame-mir-6000a precursor miRNA

Sequence

876 reads, 12.0 reads per million, 24 experiments

ucagauacucgugguggugacgacuCGUGGGUACUACUCGUCUCUAUAucaucaaauuuaUAGUACGAGAAGUACCCACAAGAcgcaucaucaaguaa
.....((((..((((((((.((.((.(((((((((.(((((..(((((..........))))).))))).))))))))).)).)))))))))))))).

Structure

ucaga    cg        a  a  C         A     CU     ucau 
     uacu  ugguggug cg cu GUGGGUACU CUCGU  CUAUA    c
     ||||  |||||||| || || ||||||||| |||||  |||||     
     auga  acuacuac gc GA CACCCAUGA GAGCA  GAUau    a
----a    --        -  A  A         A     -U     uuaa 

Annotation confidence High

Genome context

CM000057.5: 11872162-11872259 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-6000a

Mature ame-miR-6000a-5p

• Accession: MIMAT0023539
• Description: Apis mellifera ame-miR-6000a-5p mature miRNA
• Sequence: 26 - CGUGGGUACUACUCGUCUCUAUA - 48
• Evidence: experimental ; SOLiD [1], Illumina [3]

Mature ame-miR-6000a-3p

• Accession: MIMAT0023540
• Description: Apis mellifera ame-miR-6000a-3p mature miRNA
• Sequence: 61 - UAGUACGAGAAGUACCCACAAGA - 83
• Evidence: experimental ; SOLiD [1], Illumina [3]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226