Stem-loop sly-MIR482c

Accession

MI0020251

Description

Solanum lycopersicum sly-MIR482c precursor miRNA

Literature search

24 open access papers mention sly-MIR482c
(246 sentences)

Sequence

131747 reads, 2114.0 reads per million, 77 experiments

guguuucgaggagguguuggAGUGGGUGGUGUGGUAAGAUUucauauuuauuuuccauaaaaauugagaUCUUGCCAAUACCGCCCAUUCCuauggcuucugaucauuucu
(((..((.(((((.(((.((((((((((((((((((((((((((..(((((.....)))))...)))))))))))).)))))))))))))).))).))))))).)))....

Structure

----   uu  g     g   u              -            -ua     u 
    gug  uc aggag ugu ggAGUGGGUGGUGU GGUAAGAUUuca   uuuau u
    |||  || ||||| ||| |||||||||||||| ||||||||||||   ||||| u
    uac  ag ucuuc gua CCUUACCCGCCAUA CCGUUCUagagu   aaaua c
ucuu   -u  -     g   u              A            uaa     c 

Annotation confidence High

Genome context

chr6: 37388175-37388285 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sly-MIR482c

Mature sly-miR482c-5p

• Accession: MIMAT0055737
• Description: Solanum lycopersicum sly-miR482c-5p mature miRNA
• Sequence: 21 - AGUGGGUGGUGUGGUAAGAUU - 41
• Evidence: experimental ; unknown

Mature sly-miR482c-3p

• Accession: MIMAT0023603
• Description: Solanum lycopersicum sly-miR482c-3p mature miRNA
• Sequence: 70 - UCUUGCCAAUACCGCCCAUUCC - 91
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795