Stem-loop egu-MIR172b

Accession

MI0020568

Description

Elaeis guineensis egu-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

gugcagcaucaucaagauucacauccuuuucagcuucugauaccaauaaacccuuacaugauaacaaagaugugccuucagugcuaggcuucucauuuugguuauuacuauuaucguaauugucccugcaacccuugcuauccaacagaugAGAAUCUUGAUGAUGCUGCAU
((((((((((((((((((((.((((....((((...))))...((((...........(((((((.((((((.((((........))))....)))))).)))))))...........)))).....((((...)))).........)))).))))))))))))))))))))

Structure

                    a    -------cuuuucagcuucugauac    aaacccuuaca       a      ---u    uca 
gugcagcaucaucaagauuc cauc                         caau           ugauaac aagaug    gccu   g
|||||||||||||||||||| ||||                         ||||           ||||||| ||||||    ||||    
UACGUCGUAGUAGUUCUAAG guag                         guua           auuauug uuuuac    cgga   u
                    A    acaaccuaucguucccaacgucccu    augcuauuauc       g      ucuu    ucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172b

• Accession: MIMAT0024021
• Description: Elaeis guineensis egu-miR172b mature miRNA
• Sequence: 152 - AGAAUCUUGAUGAUGCUGCAU - 172
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343