Stem-loop egu-MIR172f

Accession

MI0020572

Description

Elaeis guineensis egu-MIR172f precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

augcagcaucaucaagauucucaucuucugugccuuugacuugucguagcgaggaugagaucuugcagugcuccaaacugaggugcuucgccuucagcgaucucaaaaccgccaccaggaauuuccgucucgauagcguauugggagaggggggcuucgguucugucuucaagggaugUGAAUCUUGAUGAUGCUGCAC
.(((((((((((((((((((.((((((..(((..(((((...(((((...((((..(((..(((.((((.......)))))))..)))..))))..))))).)))))..))).(((.(((.(((((.((((.............)))).))))).))))))...........)))))).))))))))))))))))))).

Structure

a                   u      ----------------------------------------------------------cu   cc     cuu     agc    au   au   g    gc 
 ugcagcaucaucaagauuc caucuu                                                            gug  uuuga   gucgu   gagg  gag  cuu cagu  u
 ||||||||||||||||||| ||||||                                                            |||  |||||   |||||   ||||  |||  ||| ||||  c
 ACGUCGUAGUAGUUCUAAG guaggg                                                            cgc  aaacu   uagcg   uucc  uuc  gga guca  c
C                   U      aacuucugucuuggcuucggggggagaggguuaugcgauagcucugccuuuaaggaccac   ca     --c     -ac    gc   gu   -    aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172f

• Accession: MIMAT0024025
• Description: Elaeis guineensis egu-miR172f mature miRNA
• Sequence: 179 - UGAAUCUUGAUGAUGCUGCAC - 199
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343