miRBase entry: ggo-let-7b

Stem-loop ggo-let-7b


Accession
MI0020624
Description
Gorilla gorilla ggo-let-7b precursor miRNA


Sequence

558751 reads, 44442.0 reads per million, 4 experiments
caaggccgggccuggcggggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugccccucagaagauaaCUAUACAACCUACUGCCUUCCcugaggagcccagu
....((.((((((..(((((.(((((((((((((((((((((((.((((((.....)))))).......)).)))))))))))))))))))))))))).)).)))).))

Structure
caag  c    -  gg     U                     -  ------a      u 
    gc gggc cu  cgggg GAGGUAGUAGGUUGUGUGGUU uc       gggcag g
    || |||| ||  ||||| ||||||||||||||||||||| ||       |||||| a
    ug cccg gg  gucCC UUCCGUCAUCCAACAUAUCaa ag       cccguu u
----  a    a  -a     -                     u  aagacuc      g 


Annotation confidence High
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Genome context
chr22: 29761546-29761654 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-let-7b-5p

Accession MIMAT0024077
Description Gorilla gorilla ggo-let-7b-5p mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUGUGGUU - 42
Evidence experimental
Illumina [1]

Mature ggo-let-7b-3p

Accession MIMAT0061278
Description Gorilla gorilla ggo-let-7b-3p mature miRNA
Sequence 75 - CUAUACAACCUACUGCCUUCC - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116