Stem-loop ggo-mir-379

Accession

MI0020657

Description

Gorilla gorilla ggo-mir-379 precursor miRNA

Literature search

1 open access papers mention ggo-mir-379
(4 sentences)

Sequence

4802 reads, 398.0 reads per million, 4 experiments

uuccgugguuccugaagagaUGGUAGACUAUGGAACGUAGGcguuaugauuucugaccUAUGUAACAUGGUCCACUAACucucaguauccaauccauccucggagggcu
((((((((...((((.(((.((((.(((((((..(((((((((..........)).)))))))..))))))).)))).)))))))...))).........)))))....

Structure

----     ---------   uuc    a   a    A       GA       -  uuau 
    uuccg         ugg   cuga gag UGGU GACUAUG  ACGUAGG cg    g
    |||||         |||   |||| ||| |||| |||||||  ||||||| ||     
    gaggc         acc   gacu cuC AUCA CUGGUAC  UGUAUcc gu    a
ucgg     uccuaccua   uau    -   A    C       AA       a  cuuu 

Annotation confidence High

Genome context

chr14: 85045381-85045489 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ggo-mir-379

Mature ggo-miR-379-5p

• Accession: MIMAT0024110
• Description: Gorilla gorilla ggo-miR-379-5p mature miRNA
• Sequence: 21 - UGGUAGACUAUGGAACGUAGG - 41
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-379-3p

• Accession: MIMAT0061298
• Description: Gorilla gorilla ggo-miR-379-3p mature miRNA
• Sequence: 59 - UAUGUAACAUGGUCCACUAAC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116