Stem-loop ggo-mir-27b

Accession

MI0020659

Description

Gorilla gorilla ggo-mir-27b precursor miRNA

Sequence

5730 reads, 405.0 reads per million, 4 experiments

cccagcgaugaccucucuaacaaggugcAGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaagguga
..........((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).))))..

Structure

cccagcgaug    -    aaca                 G    G       ugau   u 
          accu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
          |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
          ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
--------ag    a    --ag                 -    -       --uc   u 

Annotation confidence High

Genome context

chr9: 77106450-77106557 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-27b

Mature ggo-miR-27b-5p

• Accession: MIMAT0061300
• Description: Gorilla gorilla ggo-miR-27b-5p mature miRNA
• Sequence: 29 - AGAGCUUAGCUGAUUGGUGAACA - 51
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-27b-3p

• Accession: MIMAT0024112
• Description: Gorilla gorilla ggo-miR-27b-3p mature miRNA
• Sequence: 71 - UUCACAGUGGCUAAGUUCUGC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116