Stem-loop bta-mir-3613a

Accession

MI0021118

Description

Bos taurus bta-mir-3613a precursor miRNA

Literature search

1 open access papers mention bta-mir-3613a
(3 sentences)

Sequence

129087 reads, 38.0 reads per million, 291 experiments

gguuggguuuggauUGUUGUACUUUUUUUUUUGUUCguugcauuuuuaggaACAAAAAAAAAAGCCCAACCCUUcacaccgcuuca
((...(((.((((..((((..(((((((((((((((.(.........).)))))))))))))))..))))..)))).)))...)).

Structure

-  uug   u    uU    UA               g ugc 
 gg   ggu ugga  GUUG  CUUUUUUUUUUGUUC u   a
 ||   ||| ||||  ||||  ||||||||||||||| |   u
 cu   cca acUU  CAAC  GAAAAAAAAAACAag a   u
a  ucg   c    CC    CC               g uuu 

Annotation confidence High

Genome context

12: 19447836-19447921 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-3613a

Mature bta-miR-3613a-5p

• Accession: MIMAT0024574
• Description: Bos taurus bta-miR-3613a-5p mature miRNA
• Sequence: 15 - UGUUGUACUUUUUUUUUUGUUC - 36
• Evidence: experimental ; Illumina [1-2]

Mature bta-miR-3613a-3p

• Accession: MIMAT0061045
• Description: Bos taurus bta-miR-3613a-3p mature miRNA
• Sequence: 52 - ACAAAAAAAAAAGCCCAACCCUU - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026


2. PubMed ID: 22298343
   Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
   Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
   J Cell Biochem (2012) 113:2098-2111