Stem-loop lus-MIR395d

Accession

MI0021165

Description

Linum usitatissimum lus-MIR395d precursor miRNA

Literature search

1 open access papers mention lus-MIR395d
(7 sentences)

Sequence

ggccgaagucagaugucgacuggaguucccuugaccacuucauugagaagcuaaugcuaagugcuuucaCUGAAGUGUUUGGGGGAACUCuaggggucauuugacaaaaaauuuacgagggcuuuagucagauguuaacuggaguucccuugaccacuucauuggaaaguugaugcuacaagcucucauugaaauguuuggggaaacucuacaagccauuugacaaaaaaauguuggcc
((((((.((((((((.(...(((((((((((.(((...((((.(((((.(((...((.....((((((..(((((((.(((((((((((((((....((((((((.(((.............))).))))))))....))))))))))))))).)))))))...))))))....))....)))))))).))))..))).)))).)))))))...).)))))))).........))))))

Structure

      --------a        u gac       -    u   cac    u     a   -aau  uaagu      -aC       U               gggu        a   aauuu 
ggccga         gucagaug c   uggaguu cccu gac   uuca ugaga gcu    gc     gcuuuc   UGAAGUG UUGGGGGAACUCuag    cauuugac aaa     a
||||||         |||||||| |   ||||||| |||| |||   |||| ||||| |||    ||     ||||||   ||||||| |||||||||||||||    |||||||| |||     c
ccgguu         caguuuac g   aucucaa gggg uug   aagu acucu cga    cg     ugaaag   acuucac aguucccuugagguc    guagacug uuu     g
      guaaaaaaa        c aac       a    u   -ua    u     -   acau  -uagu      guu       c               aauu        a   cggga 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR395d

• Accession: MIMAT0027145
• Description: Linum usitatissimum lus-miR395d mature miRNA
• Sequence: 70 - CUGAAGUGUUUGGGGGAACUC - 90
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161