Stem-loop hbr-MIR6169

Accession

MI0021478

Description

Hevea brasiliensis hbr-MIR6169 precursor miRNA

Sequence

uuccagcaugaaauuuaauUAGUAUUUCUCUUUUCUCUCUcaauccauauguaaauugaaucauuuuuuccucuguaaacaaacuaauuuuucacguauagagagaauaauuuaagagaugaaagaaaaauauuaacuaagcaucaugcgagaacug
(((..((((((..((((.(((((((((.((((((.(((((...........(((((((.........((((((((((...(((......)))....))))))).))))))))))))))).)))))).))))))))).))))..))))))..)))...

Structure

---   ca      aa    a         C      C     caauccauaug       aaucauuuu   -       -aac   cu 
   uuc  gcauga  uuua uUAGUAUUU UCUUUU UCUCU           uaaauug         uuc cucugua    aaa  a
   |||  ||||||  |||| ||||||||| |||||| |||||           |||||||         ||| |||||||    |||   
   aag  cguacu  gaau aauuauaaa agaaag agaga           auuuaau         aag gagauau    uuu  a
guc   ag      ac    c         a      u     -----------       ---------   a       gcac   uu 

Annotation confidence Not enough data

Genome context

AJJZ010297913.1: 154-310 [+]

Mature hbr-miR6169

• Accession: MIMAT0024788
• Description: Hevea brasiliensis hbr-miR6169 mature miRNA
• Sequence: 20 - UAGUAUUUCUCUUUUCUCUCU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22407387
   Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
   "Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J"
   "Planta (2012) 236:437-445