Stem-loop hbr-MIR6171

Accession

MI0021480

Description

Hevea brasiliensis hbr-MIR6171 precursor miRNA

Sequence

agggguguauggcauauuagcuuugagcuaucucgauaugccuuucuaucuaaaaccauucuuucucuauuuuucucaauuuccagaagauugggagauucacaagaggguauugauucggAUGUGGAUUGCUGAAGGCUUUgugccacgcguggaaagag
..(.((((..((((((..((((((.(((.((((..((((.((.....(((.((.(((.(((((........(((((((((((.....))))))))))).....)))))))).)))))..)))))))))).))).)))))).)))))))))).)........

Structure

------ag g    au      uu      g   u    cg    g  uuucu   u  a   a     ucucuauu           c 
        g gugu  ggcaua  agcuuu agc aucu  auau cc     auc aa acc uucuu        uuucucaauuu c
        | ||||  ||||||  |||||| ||| ||||  |||| ||     ||| || ||| |||||        ||||||||||| a
        u cgca  ccgugU  UCGGAA UCG UAGG  UGUA gg     uag uu ugg gagaa        agaggguuaga g
gagaaagg g    --      -U      G   U    --    -  ---cu   -  a   -     ---cacuu           a 

Annotation confidence Not enough data

Genome context

KB612549.1: 2793-2953 [-]

Mature hbr-miR6171

• Accession: MIMAT0024790
• Description: Hevea brasiliensis hbr-miR6171 mature miRNA
• Sequence: 122 - AUGUGGAUUGCUGAAGGCUUU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22407387
   Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
   "Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J"
   "Planta (2012) 236:437-445