Stem-loop rno-mir-6319-1

Accession

MI0021841

Description

Rattus norvegicus rno-mir-6319-1 precursor miRNA

Sequence

427 reads, 1 reads per million, 178 experiments

ucagaaauacucagcaguguuagaggagcuggauucacagggcaguggagaugccgagaggaaugagccuuUCAUUCUCGCUGCUCUGGAGUccugcucuucaguuucuucaucggcagagugaaca
.......(((((.((.(((...(((((((.((((((.((((((((((.(((....((((((......))))))..))))))))))))))))))).)))))))........)))..)).)))))....

Structure

ucagaaa     a  -a   -----uua       u      a          g   ugcc      aa 
       uacuc gc  gug        gaggagc ggauuc cagggcagug aga    gagagg  u
       ||||| ||  |||        ||||||| |||||| |||||||||| |||    ||||||   
       gugag cg  uac        cuucucg ccUGAG GUCUCGUCGC UCU    CUuucc  g
---acaa     a  gc   uucuuuga       u      -          -   --UA      ga 

Annotation confidence Low

Genome context

chr17: 34746552-34746678 [+]

Mature rno-miR-6319

• Accession: MIMAT0025056
• Description: Rattus norvegicus rno-miR-6319 mature miRNA
• Sequence: 72 - UCAUUCUCGCUGCUCUGGAGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324