Stem-loop rno-mir-6328

Accession

MI0021852

Description

Rattus norvegicus rno-mir-6328 precursor miRNA

Sequence

4023 reads, 12.0 reads per million, 389 experiments

gagugcucuggugggagggggGAGGGCCCAGAGCAGCGGUUCUgcugggcucucagAGGCCUGCUCUGAGCCCCCGCCUccuccuucucagccuccc
(((.(((..((.((((((((((.((((.((((((((.(.(((((..(....).))))).))))))))).)))).).))))))))).)).))))))..

Structure

--   u   cu  u         - A    C        C G     cu g 
  gag gcu  gg gggaggggg G GGGC CAGAGCAG G UUCUg  g g
  ||| |||  || ||||||||| | |||| |||||||| | |||||  |  
  cuc cga  uc uccuccUCC C CCCG GUCUCGUC C GAgac  c c
cc   -   -c  u         G C    A        - G     -u u 

Annotation confidence Medium

Genome context

chr20: 3394813-3394909 [+]

Mature rno-miR-6328-5p

• Accession: MIMAT0061437
• Description: Rattus norvegicus rno-miR-6328-5p mature miRNA
• Sequence: 22 - GAGGGCCCAGAGCAGCGGUUCU - 43
• Evidence: experimental ; Illumina [1]

Mature rno-miR-6328-3p

• Accession: MIMAT0025067
• Description: Rattus norvegicus rno-miR-6328-3p mature miRNA
• Sequence: 57 - AGGCCUGCUCUGAGCCCCCGCCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324