Stem-loop rno-mir-3072

Accession

MI0021856

Description

Rattus norvegicus rno-mir-3072 precursor miRNA

Literature search

1 open access papers mention rno-mir-3072
(1 sentences)

Sequence

803 reads, 3.0 reads per million, 116 experiments

ccaagaagguggcagggcugugagugugAGGGACCCCGAGGGAGGGCAGGcugccccaggcccUGCCCCCUCCAGGAAGCCUUCUUGcuccagccccacacacgaucucaa
...(((..((((..((((((.((((..(((((...((..(((.(((((((..(((...)))))))))).)))..))...)))))..))))))))))..).)))..)))...

Structure

cca   ag   - ca      u    gu     ACC  GA   A       cu   c 
   aga  gug g  gggcug gagu  gAGGG   CC  GGG GGGCAGG  gcc  
   |||  ||| |  |||||| ||||  |||||   ||  ||| |||||||  ||| c
   ucu  cac c  cccgac cucG  CUUCC   GG  CUC CCCGUcc  cgg  
aac   ag   a ac      -    UU     GAA  AC   C       --   a 

Annotation confidence High

Genome context

chr6: 133898795-133898905 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from rno-mir-3072

Mature rno-miR-3072-5p

• Accession: MIMAT0061440
• Description: Rattus norvegicus rno-miR-3072-5p mature miRNA
• Sequence: 29 - AGGGACCCCGAGGGAGGGCAGG - 50
• Evidence: experimental ; Illumina [1]

Mature rno-miR-3072-3p

• Accession: MIMAT0025071
• Description: Rattus norvegicus rno-miR-3072-3p mature miRNA
• Sequence: 64 - UGCCCCCUCCAGGAAGCCUUCUUG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324