miRBase entry: bmo-mir-6498

Stem-loop bmo-mir-6498


Accession
MI0022088
Description
Bombyx mori bmo-mir-6498 precursor miRNA


Sequence

221954 reads, 51504 reads per million, 3 experiments
agugcggacgcgagugcgaCGCGUCUGUUGUCGCAGCCGUGCagucucggacuagugcguguuuguuugAACGUCUGCGAUGAUACAGUUucgggcacucgcaggacccguc
...((((.(((((((((..((...((((.(((((((.(((.(((...(((((........))))).))).))).)))))))...))))...)).)))))))).)...)))).

Structure
agu    --a -        ga  CGU    --U       C   G   ucu     uag 
   gcgg   c gcgagugc  CG   CUGU   GUCGCAG CGU Cag   cggac   u
   ||||   | ||||||||  ||   ||||   ||||||| ||| |||   |||||    
   ugcc   g cgcucacg  gc   GACA   UAGCGUC GCA guu   guuug   g
--c    cag a        -g  uUU    UAG       U   A   --u     ugc 


Annotation confidence Low
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Genome context
NW_004582523.1: 3634-3745 [+]

Database links

Mature bmo-miR-6498-5p

Accession MIMAT0025323
Description Bombyx mori bmo-miR-6498-5p mature miRNA
Sequence 20 - CGCGUCUGUUGUCGCAGCCGUGC - 42
Evidence experimental
SOLiD [1]

Mature bmo-miR-6498-3p

Accession MIMAT0025324
Description Bombyx mori bmo-miR-6498-3p mature miRNA
Sequence 70 - AACGUCUGCGAUGAUACAGUU - 90
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 22662121
    Transposable-element associated small RNAs in Bombyx mori genome
    Cai Y, Zhou Q, Yu C, Wang X, Hu S, Yu J, Yu X
    PLoS One (2012) 7:e36599