Stem-loop ssc-mir-7-1

Accession

MI0022122

Description

Sus scrofa ssc-mir-7-1 precursor miRNA

Literature search

14 open access papers mention ssc-mir-7-1
(28 sentences)

Sequence

4425044 reads, 2359.0 reads per million, 208 experiments

cagccccaucUGGAAGACUAGUGAUUUUGUUGUUgucucacugcgcucaaCAACAAGUCCCAGUCUGCCGCAuggugccggcca
..(((((((.(((.(((((.(.(((((.(((((((............))))))))))))).))))).))).))))....)))..

Structure

ca   ----    c   A     A U     U       ucuca 
  gcc    ccau UGG AGACU G GAUUU GUUGUUg     c
  |||    |||| ||| ||||| | ||||| |||||||      
  cgg    gguA GCC UCUGA C CUGAA CAACaac     u
ac   ccgu    C   G     C -     -       ucgcg 

Annotation confidence High

Genome context

chr1: 212651386-212651469 [-]

Mature ssc-miR-7-5p

• Accession: MIMAT0002141
• Description: Sus scrofa ssc-miR-7-5p mature miRNA
• Sequence: 11 - UGGAAGACUAGUGAUUUUGUUGUU - 34
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-7-1-3p

• Accession: MIMAT0052565
• Description: Sus scrofa ssc-miR-7-1-3p mature miRNA
• Sequence: 51 - CAACAAGUCCCAGUCUGCCGCA - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100